ImageDataExtractor Documentation

ImageDataExtractor is a toolkit for the automatic extraction of data from microscopy images.

This guide provides a quick tour through ImageDataExtractor concepts and functionality.



If you use ImageDataExtractor as a resource in your research, please cite the following works:

K. T. Mukaddem, E. J. Beard, B. Yildirim, J. M. Cole, "ImageDataExtractor: A Tool to Extract and Quantify Data from Microscopy Images", J. Chem. Inf. Model. (2019)

B. Yildirim, J. M. Cole, "Bayesian Particle Instance Segmentation for Electron Microscopy Image Quantification", J. Chem. Inf. Model. (2021)


This project was financially supported by the Science and Technology Facilities Council (STFC) and the Royal Academy of Engineering (RCSRF1819\7\10).